PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048334-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 374aa    MW: 42778.8 Da    PI: 8.3689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048334-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.41e-1944128280
          trihelix   2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                       Wt +e+l L+ea+++++er  rg      k ++ +W++v +++ ++g+ rs++qC++kw+nl ++ykk+++ e++ ++++ss + 
  PSME_00048334-RA  44 WTLEETLILLEAKKQDDERRMRGgdkergKTAELRWKWVENYCFKHGCIRSQNQCNDKWDNLLRDYKKVRDYENRLSPGQSSYWH 128
                       **************999999874333333799********************************************999998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.50336106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-537108IPR009057Homeodomain-like
PfamPF138372.8E-1244120No hitNo description
SuperFamilySSF819955.49E-5175218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVFEELRRLG NAINMTDPST SALVRVESTD TGGERGREYR KGIWTLEETL ILLEAKKQDD  60
ERRMRGGDKE RGKTAELRWK WVENYCFKHG CIRSQNQCND KWDNLLRDYK KVRDYENRLS  120
PGQSSYWHLE KHERKERGLP SNLLYQVYEA LHEVVDKRYA PRITHAQASG EKPSMSLQQH  180
EQQQQHTSQP NLPQQQQLPP PPTHQQIPSQ QHHHQQPASG GCSVEISDSS ESDGSELPHS  240
PAKRRRVWRS IHGLAPAMSK CTKDLTQTLM KCEEKKDKRH MDILGVEERK LNIEQTKTEI  300
SRQGIAGLIS AFNSWDSDSV PRTGTAIFHQ SLAQGEAGAL KLLATHEASS RSAYATAMSE  360
KGLYDTNNRY ADLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960379.14e-96trihelix transcription factor ASR3
RefseqXP_002967337.14e-96trihelix transcription factor ASR3
TrEMBLD8QR481e-94D8QR48_SELML; Uncharacterized protein
STRINGEFJ319362e-95(Selaginella moellendorffii)
STRINGEFJ379182e-95(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-42Trihelix family protein