PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00048331-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 342aa MW: 37947.5 Da PI: 4.4964

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048331-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.9e-09	4	25	22	45
T-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwq 45 + W++Ia++++ gRt++++k++w+ PSME_00048331-RA 4 R-WSLIAAHLP-GRTDNEIKNYWN 25 4.*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.197	1	32	IPR017930	Myb domain
CDD	cd00167	4.76E-7	3	25	No hit	No description
SuperFamily	SSF46689	1.48E-7	3	33	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-12	3	28	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-7	4	26	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MINRWSLIAA HLPGRTDNEI KNYWNSSIKK KFMVRHHPSS SPTTNSQTNI PSQSDRSRNT 60 NSLFACDAFT PSQSNQPYLF ISEPYVSPNN TFNGATSEEN QLSIPNVLKL KQGQVQDQND 120 EISIDSDLSD IQLISFYQPW FDATSTHTLE SGSSHVAQGL HTCKTAESST CDQLIIEPCR 180 TTVPHPVAPA SGDYSLASTS NVVPAAFVDS SRSLIEEFKD DGDLFGHENE NLIDYSPLKA 240 TSFGWSASHS YSNAPECCRV VDLGAYTTSE PEISIVEDYE KTTHQSWLPL NSSSHFCAPD 300 GFQANDHFSD RLRYDTSLGV PCTDIDINSI QNYQLLEFGL PQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MINRWSLIAA HLPGRTDNEI KNYWNSSIKK KFMVRHHPSS SPTTNSQTNI PSQSDRSRNT  60
NSLFACDAFT PSQSNQPYLF ISEPYVSPNN TFNGATSEEN QLSIPNVLKL KQGQVQDQND  120
EISIDSDLSD IQLISFYQPW FDATSTHTLE SGSSHVAQGL HTCKTAESST CDQLIIEPCR  180
TTVPHPVAPA SGDYSLASTS NVVPAAFVDS SRSLIEEFKD DGDLFGHENE NLIDYSPLKA  240
TSFGWSASHS YSNAPECCRV VDLGAYTTSE PEISIVEDYE KTTHQSWLPL NSSSHFCAPD  300
GFQANDHFSD RLRYDTSLGV PCTDIDINSI QNYQLLEFGL PQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	9e-12	myb domain protein 103