PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047844-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 263aa    MW: 28712.2 Da    PI: 10.4994
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047844-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.41.6e-2730126378
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasece 74 
                       +k+ +++++hTkv+g +RRv ++++ aa++F+L+   G+++d++ti+WLl++ kp i+++tgt                      +s+ ++c+
  PSME_00047844-RA  30 VKRPSTKDRHTKVNGQGRRVKIPIPSAAQIFQLTYGFGHKSDGETIQWLLNKVKPTIIAATGTcvvptlplpivgsgklykrdmATSDTRSCS 122
                       6999***********************************************************888888888877777776666444444554 PP

               TCP  75 aess 78 
                       ++++
  PSME_00047844-RA 123 HKDD 126
                       4333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-203494IPR005333Transcription factor, TCP
PROSITE profilePS5136920.1493589IPR017887Transcription factor TCP subgroup
PRINTSPR006203.2E-18192214IPR002119Histone H2A
SMARTSM004141.8E-7193263IPR002119Histone H2A
SuperFamilySSF471131.26E-20203263IPR009072Histone-fold
PfamPF001251.0E-6203263IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.101.7E-23203263IPR009072Histone-fold
PRINTSPR006203.2E-18222237IPR002119Histone H2A
PRINTSPR006203.2E-18237250IPR002119Histone H2A
PRINTSPR006203.2E-18251263IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSEVQNQSK ERLFLEGPQS NDPTRNALVV KRPSTKDRHT KVNGQGRRVK IPIPSAAQIF  60
QLTYGFGHKS DGETIQWLLN KVKPTIIAAT GTCVVPTLPL PIVGSGKLYK RDMATSDTRS  120
CSHKDDRAEI DMRAPFESVK DVVSLFAKRV VGDKIIEKRP KIPEEKKGVF RILGLDFKVG  180
SLVGDLGIIS INGRKGGEDG FGMFPVGPNH RLLKSRVSAN GRVGATAAIY SAAILEYLTA  240
EVLELAGNAN KDIKVKCITP RHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z30_C2e-282042633190Histone H2A.Z
5z30_G2e-282042633190Histone H2A.Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-27TCP family protein