PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00047393-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 224aa MW: 25439.4 Da PI: 6.7981 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 272.7 | 4.7e-84 | 81 | 220 | 41 | 180 |
VOZ 41 eglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdys 133 g+p ++pvl p+gidlkdg+lfaalsak+q k vgipecegaatakspwna elfd+ +lege++rewlffdk rr fesgnrkqrslpdys PSME_00047393-RA 81 SGAPRMRPVLHPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAYELFDMYVLEGESMREWLFFDKSRRDFESGNRKQRSLPDYS 173 47899**************************************************************************************** PP VOZ 134 grgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 grgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+ PSME_00047393-RA 174 GRGWHESRKQVIKDFGGLKRSYYMDPQPSTHFEWHLYEYEINDCDAV 220 *********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MTGALQHTAG QSSAYSSSFL LRRVQTDSSH GFFLTIRSQE EEGEQYQIGR VFKSFREMAG 60 EKPKTGNVWN TVKPFVNGGA SGAPRMRPVL HPGGIDLKDG PLFAALSAKT QEKAVGIPEC 120 EGAATAKSPW NAYELFDMYV LEGESMREWL FFDKSRRDFE SGNRKQRSLP DYSGRGWHES 180 RKQVIKDFGG LKRSYYMDPQ PSTHFEWHLY EYEINDCDAV PYID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118531 | 4e-60 | BT118531.1 Picea glauca clone GQ04007_G03 mRNA sequence. | |||
GenBank | EF677286 | 4e-60 | EF677286.1 Picea sitchensis clone WS02764_M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010904889.1 | 4e-81 | transcription factor VOZ1 | ||||
Refseq | XP_010916038.1 | 3e-81 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_019705069.1 | 3e-81 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 1e-75 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0K9NP50 | 2e-82 | A0A0K9NP50_ZOSMR; Vascular plant one zinc finger protein | ||||
STRING | ERN14021 | 4e-80 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 5e-78 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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