PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00047014-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22367.5 Da PI: 5.175 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.9 | 2.8e-27 | 6 | 93 | 15 | 101 |
DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 dCv+ pyf++++ +++fa+vhk+FGa nv+kll +lp +r +a+ +++yeA+ +++dP yG+v++i++lqqq+ +l+aela ++++l PSME_00047014-RA 6 DCVFTPYFCSNEgAARFAAVHKIFGAINVSKLLLHLPMPDRCEAVVTILYEAHDQLQDPFYGCVAHIFALQQQVVSLQAELAFVQAQL 93 7*********9979*********************************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.463 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-24 | 6 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDSILDCVFT PYFCSNEGAA RFAAVHKIFG AINVSKLLLH LPMPDRCEAV VTILYEAHDQ 60 LQDPFYGCVA HIFALQQQVV SLQAELAFVQ AQLASRVSSG SALISVNHPV ISSSLYSQHL 120 LFPAHLSLPC HPIPQPYNAL LSRVKEENSC SFATYMDCDF SVSPNDSSSP LMEVLQRCRS 180 LEENEGEDNG EMQALAHALL RRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 6 | 113 | 25 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 6 | 113 | 25 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A9D3 | 5e-90 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 3e-44 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-40 | lateral organ boundaries-domain 16 |