PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046961-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 300aa MW: 36348 Da PI: 7.1703

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046961-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.3	2.8e-25	37	119	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W +qe+++ i++r e+e+++ ++k++k+lWe ++ km++rg++rs++qCk+kw+nl +ryk + +e + + ++cp+f++l+a PSME_00046961-RA 37 QWGHQETRDFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSRGYRRSAEQCKCKWKNLVNRYKGKEISEPD----NGRQCPFFEELDA 119 7***********************************************************99988887....4678****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.155	30	94	IPR017877	Myb-like domain
CDD	cd12203	2.10E-25	36	101	No hit	No description
Pfam	PF13837	1.6E-23	37	119	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MQGDNMTAMA ALPLQSPSME AEMNQAQLKR KDERIPQWGH QETRDFIAIR AELEKDFTQT 60 KRNKTLWEII AGKMKSRGYR RSAEQCKCKW KNLVNRYKGK EISEPDNGRQ CPFFEELDAV 120 FKERERNMDR LLLESKAGMK PKEKVRRLKR LLGEKSSDDY SEDEEDEEDD SEEEKIIKRK 180 KSKADKERQR VTADKYRANS MQEVLEDFFQ QQQRFEEQWR EAVEGREEER RLREREWRIA 240 MEKLENERVM KEQAWRERED QRRAREEARA ERRDELFAAL ISKLNQEERY FLFCIILFQG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF087781	0.0	EF087781.1 Picea sitchensis clone WS02749_G08 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	1e-105	trihelix transcription factor GT-3b-like
TrEMBL	A9P2A3	1e-154	A9P2A3_PICSI; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-104	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-33	Trihelix family protein