PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046719-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 67aa MW: 7693.83 Da PI: 8.0479 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 34 | 65 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT+eEd++l ++v+++G g W + +++ g PSME_00046719-RA 34 RGAWTAEEDLILCEYVRLHGDGGWQKLPQKAG 65 89*************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-11 | 25 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.238 | 29 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-8 | 29 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-8 | 34 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-4 | 36 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MRSVESITVE FIAYRKKIFD MGRSRCCSKE VLNRGAWTAE EDLILCEYVR LHGDGGWQKL 60 PQKAGDT |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899027.1 | 2e-17 | transcription factor TT2-like | ||||
Swissprot | Q9S9K9 | 1e-12 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 1e-17 | A0A167V911_PICAB; Transcription factor MYB31 | ||||
TrEMBL | B8LMJ6 | 1e-17 | B8LMJ6_PICSI; Uncharacterized protein | ||||
STRING | GLYMA13G16890.1 | 3e-16 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 2e-15 | myb domain protein 41 |