PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046642-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 323aa    MW: 36151.6 Da    PI: 4.2897
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046642-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.95.6e-261432641122
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL +cAea+s+g + l++ +L rl+el+sp+g++++R+a y+  AL +  ++s ++l   ++ ++      ++ l a kl++ + P++++
  PSME_00046642-RA 143 LIHLLSACAEAMSQGAHDLVEVILYRLRELVSPTGSTIERVAYYLFDALLHSNVSSLPHLELLFHKRN-----NDHFLGAPKLLHVAYPYIRI 230
                       689**********************************************9999998888885444444.....57999*************** PP

              GRAS  94 shltaNqaIleavege.....ervHiiDfdisqG 122
                        h+taNq Ileav+g+      ++HiiDfdi++G
  PSME_00046642-RA 231 PHFTANQCILEAVAGAgvtsnMEIHIIDFDIMEG 264
                       **************9988877889********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.554117323IPR005202Transcription factor GRAS
PfamPF035141.9E-23143264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCRMSNMGSM EAGMGTSWIS EHDWDHIFSN PLHANWDDKT NLQGIEEYLM DEELQDCNNN  60
IEEDLKSSPG RDTIVVHCPV QNTSPVTIED SGLVVGDEQV SDCAVATNSS CKSKLIETNE  120
AGLSSLNVDH GVLEDMEYNG MRLIHLLSAC AEAMSQGAHD LVEVILYRLR ELVSPTGSTI  180
ERVAYYLFDA LLHSNVSSLP HLELLFHKRN NDHFLGAPKL LHVAYPYIRI PHFTANQCIL  240
EAVAGAGVTS NMEIHIIDFD IMEGRERGCG RGRPATNVEV LEEMRELWAH IAVMELGRER  300
DLEAGDEMEE EELNYVYCVS LES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.18e-14GRAS family protein