PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046595-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25131.2 Da PI: 8.8066 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 115 | 198 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l++s+v++ +l lp +f+++h k + + ++lede+g + + +i +++ l++GWk F+ +++L++gD +vF+l++ ++f PSME_00046595-RA 115 FIKSLVRSHVSSCFWLGLPTDFCRKHLPK--KYTSMVLEDEKGAECDAVFIAVRTG----LSGGWKAFALDHNLDDGDALVFELVEPTRF 198 89************************544..4457***************776666....***********************9876666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-19 | 109 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-22 | 110 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-22 | 113 | 201 | No hit | No description |
SMART | SM01019 | 9.7E-17 | 115 | 201 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 115 | 199 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.8 | 115 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
METVCNRIDC MNHCSSIVDF SFLGGWFMKD LGLSKLCQGL QAVVSASKSQ TRQVMKPRRL 60 KDEEGLPLER RYGRKQNGKN QVLHNIKLAS YEARMQAMQN AEKIVEDLGS KHPSFIKSLV 120 RSHVSSCFWL GLPTDFCRKH LPKKYTSMVL EDEKGAECDA VFIAVRTGLS GGWKAFALDH 180 NLDDGDALVF ELVEPTRFKV STPISLLIKC AYFLKFCQFL NN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024981962.1 | 8e-58 | putative B3 domain-containing protein At5g58280 isoform X1 | ||||
Swissprot | Q5KQI4 | 9e-50 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A124SCL0 | 5e-57 | A0A124SCL0_CYNCS; B3 DNA binding domain-containing protein | ||||
STRING | Migut.D00805.1.p | 1e-51 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-42 | B3 family protein |
Publications ? help Back to Top | |||
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