PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046384-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25050.2 Da PI: 9.2735 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.8 | 3.6e-09 | 6 | 31 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhPtd+el+++yLk k+++ PSME_00046384-RA 6 LPPGFRFHPTDKELISCYLKGKLTHG 31 79******************998764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-9 | 3 | 31 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-6 | 7 | 48 | IPR003441 | NAC domain |
Pfam | PF02171 | 7.0E-6 | 61 | 100 | IPR003165 | Piwi domain |
SuperFamily | SSF54928 | 1.34E-6 | 99 | 146 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 1.1E-4 | 99 | 146 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGTFVLPPGF RFHPTDKELI SCYLKGKLTH GLKASSRARA YYRGGPFDSQ IHVILQNNGG 60 LKPICETDLG LVSECCLTKH VFKLRKQYLA NVALKINVKV VYCRVCGDPN SVLRFAFVEF 120 TDQESARAAL SRTMLGFYPV RVLLSKTVIL QVNPTFLPSA SNVLSKLGCL RVKKIPPQLA 180 SATLALEREV PPISAIENPL EELMQGNERL DPVVIDSEPT NGGQGPTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3vna_A | 4e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
4g0p_A | 3e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
4g0q_A | 3e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
4g0x_A | 3e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
4g0y_A | 3e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
4g0z_A | 3e-17 | 43 | 113 | 79 | 147 | Protein argonaute 1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT114764 | 3e-33 | BT114764.1 Picea glauca clone GQ03601_M03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824355.1 | 9e-24 | PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-07 | Arabidopsis NAC domain containing protein 87 |