PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046210-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 896aa    MW: 100187 Da    PI: 9.0435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046210-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-091043438
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W t+E++ll+ av+++G+++W++I++++   Rt +
  PSME_00046210-RA 10 WGTWEELLLAGAVERHGTKDWELISEELR-ARTVY 43
                      *****************************.89865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.434562IPR017884SANT domain
Gene3DG3DSA:1.10.10.609.3E-5655IPR009057Homeodomain-like
SuperFamilySSF466896.77E-5661IPR009057Homeodomain-like
SMARTSM007174.7E-4660IPR001005SANT/Myb domain
PfamPF002491.6E-7942IPR001005SANT/Myb domain
CDDcd001679.37E-71054No hitNo description
Gene3DG3DSA:1.20.920.103.0E-19519648IPR001487Bromodomain
SuperFamilySSF473702.09E-22528648IPR001487Bromodomain
SMARTSM002974.8E-19535646IPR001487Bromodomain
CDDcd043691.83E-18545641No hitNo description
PfamPF004391.8E-12552630IPR001487Bromodomain
PROSITE profilePS5001412.25557627IPR001487Bromodomain
PRINTSPR005032.2E-5574590IPR001487Bromodomain
PRINTSPR005032.2E-5590608IPR001487Bromodomain
PRINTSPR005032.2E-5608627IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MGGEEKNKMW GTWEELLLAG AVERHGTKDW ELISEELRAR TVYVFSPEDC KAKYDVLRRR  60
FNGYSSDLLL EVLRERRINE LKTKEIPLKN DSIGSLESEI RRLKAGEDRK QGSERSKDRS  120
SAGSFTEAAA PDSAAGCFTE AAAPDGADTA SPTKHQRIET VCEIDKGEGI QSDQIGGDRE  180
SNPLPAEKGS PKRDPDRNEE MKAAESIPIP VAVAVTASRT EGGPKNQQNQ QLISEVHPSS  240
PLDSFYGSSE TLADEKENRR SLHDFVESKD SNIKARRLRT DLVQRKTDFR SSRRPATNVS  300
HRVLMPHKPK TEDFDAEPAQ RSNPQQNPED DHAYPPSPVK SEPDRDGERN QDQVSIGCTE  360
NSELHTVDTN ASERSSAPIR RRARRKQGKR NPAAFGVTTT TDSGTSRQKH NQFRIEEGSA  420
ESIDIEEKEF KGTRDDECLK GLTVDSDLLS SANPAEISTR QDTKAFSSSR EASESGHRHG  480
HGKGQEHCKE SEEFMDAWNQ TTRSSGDSHI EDRMEGTDDR MEGTDEIETS PMSRRSRREP  540
KVPGKLLPLL ECLRSITSHK FGPVFKHKRE SQNKQQYRNM IRRHMDLGTI RAKLEEGSYS  600
GSLEFFRDLL LVFNNALIFY PKTSQEHGAA WVLRQLANNE MAKIFQTEAL LKQEGPSTRK  660
RDPRAVPRPP VNATMFNPNS RRRNARPLLG GGRAVGRPKS ATRLNTREEK YNSQEPPPKE  720
PIEVSSSTGL KPEPEIEPEE NFEAEATNIS KTPKVADRKA SGSNIQPKKG SVFHSDSKKS  780
SNSEPKTAPA PAPISNSNTP QVESRNNSSS HSHSNHHHHN NNGHGLEQRK AAATMEEKGI  840
HIPEPTHKQR SDREHLPPSK RGVGRPPKHA KRGADPPSKS SEDLELSSRP RKKLKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R6X01e-109A0A0D6R6X0_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.18e-24DNA-binding bromodomain-containing protein