PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046172-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 371aa MW: 42360.2 Da PI: 7.3606

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046172-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	18	73	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+ +++++yp+++++++L+++lgL+e+qV+ WF rR k+kk PSME_00046172-RA 18 QKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKK 73 589999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.277	14	74	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	17	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.99E-17	17	76	IPR009057	Homeodomain-like
CDD	cd00086	1.83E-17	18	75	No hit	No description
Pfam	PF00046	9.9E-16	18	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-18	19	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MIEVFDSGFM EDKGFVEQKR RLKTPSQVEA LENIYAEHKY PTESMKAKLS RELGLSEKQV 60 QRWFRHRRLK DKKGKKEDPD SNEELDAGSG SNLQQQQHVV RTELGRSEKR RLLGTSDYPS 120 AVLAAELTDH DMLKRNHGVM EEDPHHAGNV STSQDTSSLQ SRSSYEMEAL RNGNYVEMKG 180 SNTKKRKGQV MHMGMEHTYP QHFAAATEEQ YTARGLKQTG GSNSKQAKNW NHFKAKEGEN 240 HRFLNNHDYP SAVLAAELTD RELLKGNHDI VEDPYVSLSQ ERSSLQSGSS YEMEARRLPS 300 KSLNSFEIEA RSKRREKEGL HMGVEPLYWQ HAVEHRAISG VKSQLGRLFQ EDGPMLGVEF 360 DPLPPDAFGY R

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MIEVFDSGFM EDKGFVEQKR RLKTPSQVEA LENIYAEHKY PTESMKAKLS RELGLSEKQV  60
QRWFRHRRLK DKKGKKEDPD SNEELDAGSG SNLQQQQHVV RTELGRSEKR RLLGTSDYPS  120
AVLAAELTDH DMLKRNHGVM EEDPHHAGNV STSQDTSSLQ SRSSYEMEAL RNGNYVEMKG  180
SNTKKRKGQV MHMGMEHTYP QHFAAATEEQ YTARGLKQTG GSNSKQAKNW NHFKAKEGEN  240
HRFLNNHDYP SAVLAAELTD RELLKGNHDI VEDPYVSLSQ ERSSLQSGSS YEMEARRLPS  300
KSLNSFEIEA RSKRREKEGL HMGVEPLYWQ HAVEHRAISG VKSQLGRLFQ EDGPMLGVEF  360
DPLPPDAFGY R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123558	0.0	BT123558.1 Picea sitchensis clone WS04714_L06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ABF4	0.0	D5ABF4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-21	HB-other family protein