PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045960-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 532aa    MW: 58922.5 Da    PI: 5.1539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045960-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.2e-26959150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50
                      krien + rqvtfskRrng+lKKA+ELSvLCdaev ++ifs++gk lye++
  PSME_00045960-RA  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGKaLYEFA 59
                      79******************************************8799998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-26169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.202162IPR002100Transcription factor, MADS-box
CDDcd002655.76E-38269No hitNo description
PRINTSPR004041.7E-23323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-241058IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-233859IPR002100Transcription factor, MADS-box
SuperFamilySSF525403.19E-24291467IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.7E-14293358IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM005348.2E-25329466IPR000432DNA mismatch repair protein MutS, C-terminal
Gene3DG3DSA:3.40.50.3001.5E-15359464IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF004882.6E-20359468IPR000432DNA mismatch repair protein MutS, C-terminal
PROSITE patternPS004860369385IPR000432DNA mismatch repair protein MutS, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006298Biological Processmismatch repair
GO:0005524Molecular FunctionATP binding
GO:0030983Molecular Functionmismatched DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MARGKTLMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGKALYEFAN  60
PRVEGTLERS PLERRLDDKY VYLDVVPGTL LQSGIINPPP EICDMMRDHL RSLTCKMTIP  120
VSPRFRVVFS ESIRVSLLVG RRDSDKVACI IDKSGFDYVD GPAYRALAYD YLQFSSSYPF  180
VSEIRAWFAL LLVNAQDGIM DVFGIEVDFC DAGNFDSEDN DLCLDEVETL NSIVSLFCQQ  240
EAYWSHIVDT IGCIDVILGF AISANLSEGS TCRPLFVSAG LKNNSLGGRI EGSILSVKGL  300
WHPYAVRGQG GVAVPNDVDL GNNGEHDCPR AMLLTGPNMG GKSTLLRATC LTVIMAQAAS  360
VLRYATEDSL VVLDELGRGT YTFDGYAIAY AVNPTIVHNR GDFNILSEKE AIIDNSCSSD  420
FLETERQLIF LYKLRSGASP EIYGLQVALL AGIPKSIVKA AFDAIQVMKS LLSSNFKSSE  480
LRAEFSTIHE QWLRTLLATP NNKSLCNSMD FTTEDAHDTL LCVWKELQKF SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o8b_B3e-232444987091017DNA mismatch repair protein MSH6
2o8c_B3e-232444987091017DNA mismatch repair protein MSH6
2o8d_B3e-232444987091017DNA mismatch repair protein MSH6
2o8e_B3e-232444987091017DNA mismatch repair protein MSH6
2o8f_B3e-232444987091017DNA mismatch repair protein MSH6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110961e-171BT111096.1 Picea glauca clone GQ03232_J19 mRNA sequence.
GenBankBT1241801e-171BT124180.1 Picea sitchensis clone WS04720_G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026404674.11e-80DNA mismatch repair protein MSH7-like
TrEMBLA0A3S3NY862e-83A0A3S3NY86_9MAGN; DNA mismatch repair protein MutS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-29AGAMOUS-like 20