PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045947-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 366aa MW: 41274.6 Da PI: 4.9367

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045947-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	378.3	2.2e-116	114	323	1	216
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++p+l p+gidlkdg+lfaalsak+q k v ipecega+takspwna PSME_00045947-RA 114 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPILYPRGIDLKDGSLFAALSAKTQEKAVDIPECEGAVTAKSPWNAY 206 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkp gnrkqrslp ysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00045947-RA 207 ELFDMYVLEGESMREWLFFDKP------GNRKQRSLPYYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 293 *****************9......9************************************************************ PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlt 216 lk+v +kk++kgkv d+l+dlq++lg+l PSME_00045947-RA 294 LKMVCSKKNNKGKVGGDPLVDLQHQLGKLF 323 **************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MQDFLVDDLH TLEKYFERVS RCTNIGEGLH QNSYPQTLEQ LPANIEHQEN NNYVQTSEQL 60 PPNIVEGLEV TSGLEGGQIN FHQDYIPAAQ PIFTLTGEEE TSPIFNGPQP GLCPPPAAFL 120 GPKCALWDCS RPAQGTKWCQ DYCSDFHMTL ASNEGAPGMR PILYPRGIDL KDGSLFAALS 180 AKTQEKAVDI PECEGAVTAK SPWNAYELFD MYVLEGESMR EWLFFDKPGN RKQRSLPYYS 240 GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDACALY RLELKMVCSK 300 KNNKGKVGGD PLVDLQHQLG KLFADNYTYS ASTQVAPIGK SLLMGHECSM VILSKKQVDA 360 MQLNDK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MQDFLVDDLH TLEKYFERVS RCTNIGEGLH QNSYPQTLEQ LPANIEHQEN NNYVQTSEQL  60
PPNIVEGLEV TSGLEGGQIN FHQDYIPAAQ PIFTLTGEEE TSPIFNGPQP GLCPPPAAFL  120
GPKCALWDCS RPAQGTKWCQ DYCSDFHMTL ASNEGAPGMR PILYPRGIDL KDGSLFAALS  180
AKTQEKAVDI PECEGAVTAK SPWNAYELFD MYVLEGESMR EWLFFDKPGN RKQRSLPYYS  240
GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDACALY RLELKMVCSK  300
KNNKGKVGGD PLVDLQHQLG KLFADNYTYS ASTQVAPIGK SLLMGHECSM VILSKKQVDA  360
MQLNDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	5e-42	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-122	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-112	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-120	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-121	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-115	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]