PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045860-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 280aa    MW: 31240.4 Da    PI: 4.8757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045860-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.96.5e-13104692128
               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + s ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  PSME_00045860-RA  10 IDSGGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 46 
                       55557899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.459176IPR003441NAC domain
PfamPF023655.5E-6146IPR003441NAC domain
SuperFamilySSF1019411.03E-161276IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
YWDGQAYINI DSGGTQKVGV KKALVFYGGR PPKGIKTNWI MHEYRLADSG ARPSSFPNKK  60
GSLRLDDWVL CQIYKKNGHS QRVQGAERDE SPSADEVMTS LPNIEQQNKL QLPKLGPFSG  120
LLDTNDPFIE GLLNDEAMDG NGNISRLPHQ VHSSDLSHNN FSNSNDNNSD CQFEVVLKQE  180
ALAVDNENKF NSLKRTLSLA AFGDEEIHSA KRFNDMQNNY SYNVNNNVLA LLNSMQPNQT  240
FQQQNFLSAL IGIGTCFLLH EGNEFPNDGG DEGNQQNQTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-21182100174NAC domain-containing protein 19
3swm_B3e-21182100174NAC domain-containing protein 19
3swm_C3e-21182100174NAC domain-containing protein 19
3swm_D3e-21182100174NAC domain-containing protein 19
3swp_A3e-21182100174NAC domain-containing protein 19
3swp_B3e-21182100174NAC domain-containing protein 19
3swp_C3e-21182100174NAC domain-containing protein 19
3swp_D3e-21182100174NAC domain-containing protein 19
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111671e-149BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-27NAC-like, activated by AP3/PI