PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045762-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 295aa    MW: 32716.9 Da    PI: 4.6394
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045762-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.96.8e-161752498
             NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                      +rikki++aded+ +i+  +P l+sk+ elf+ +l  r++  + +   +t+  s ++++v r ++fdfl +iv +
  PSME_00045762-RA  1 SRIKKIMQADEDIGKIAQAVPLLVSKSLELFLKDLCDRTYDITLQRGAKTVSASHLKQCVHRYNVFDFLREIVNK 75
                      7*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-23174IPR009072Histone-fold
PfamPF008083.7E-17260IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.1E-19777IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
SRIKKIMQAD EDIGKIAQAV PLLVSKSLEL FLKDLCDRTY DITLQRGAKT VSASHLKQCV  60
HRYNVFDFLR EIVNKVPDMG GSDAATGEER NGGRRRKAQE GDENESDEDD VKRARMGAHH  120
GSGRGRGRRG RGRGSRGGSS GRNGITAEKF EDEDLDLSSE HSEKQEKVSE TFTDVNTETI  180
ETKVAVNLGS TPVVRDFDLN MELDESGVVA SMPMQPPVKL EHQPSGVANV HIAVKEADEF  240
PSDVPSVEPP VKQEEQYPTW SHSDVDNVAI DSMQFHVHSD RIVDQDEDDY DNEDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-161601574Transcription Regulator NC2 alpha chain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1051660.0BT105166.1 Picea glauca clone GQ02819_F02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R6F97e-74A0A0D6R6F9_ARACU; Uncharacterized protein
STRINGAquca_014_00934.12e-61(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.17e-47NF-YC family protein