PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045602-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 22004.3 Da PI: 9.1987 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.3 | 3.4e-40 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA+ar+rdPvyG++g+i +lq+q++ l++e PSME_00045602-RA 41 PCAACKLLRRRCAQECPFSPYFSPLEPNKFASVHKVFGASNVSKMLMKVPESQRADAANSLVYEANARLRDPVYGSTGTIYSLQRQIQLLQVE 133 7******************************************************************************************** PP DUF260 94 lallkee 100 +++++e PSME_00045602-RA 134 FNAVRAE 140 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.322 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-40 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
IVITDRDSNR LCRKIFEQAD ICEMARRPII GAPAAINTVT PCAACKLLRR RCAQECPFSP 60 YFSPLEPNKF ASVHKVFGAS NVSKMLMKVP ESQRADAANS LVYEANARLR DPVYGSTGTI 120 YSLQRQIQLL QVEFNAVRAE VMRYKYRDPV FQPPMVGVYD VSSDDFMVTN PTAGTVNSVE 180 HTAKQRYYSV MTHNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-42 | 32 | 144 | 2 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-42 | 32 | 144 | 2 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021684825.1 | 1e-71 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-61 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1Q3B3W3 | 5e-70 | A0A1Q3B3W3_CEPFO; DUF260 domain-containing protein | ||||
STRING | evm.model.supercontig_19.92 | 3e-70 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 5e-60 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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