PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 265aa    MW: 29395.1 Da    PI: 8.48
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-2062110355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+ +l+g
  PSME_00045522-RA  62 YRGVRRRS-WGKWVSEIREPKK---KSRIWLGSFDTPEMAARAYDVAAFYLKG 110
                       9****887.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1360110IPR001471AP2/ERF domain
SMARTSM003805.5E-3761125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3061120IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2061120IPR016177DNA-binding domain
PROSITE profilePS5103223.86861119IPR001471AP2/ERF domain
CDDcd000182.32E-3162121No hitNo description
PRINTSPR003672.2E-106273IPR001471AP2/ERF domain
PRINTSPR003672.2E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDKKASFLPD SMLASSTTDT EARSKSAPKG NNGMKRIRTQ DVASPSPPHN KSRLKLRQNP  60
AYRGVRRRSW GKWVSEIREP KKKSRIWLGS FDTPEMAARA YDVAAFYLKG KKHALLNFPE  120
LIDHLPQPVS LSPRDIQAAA AEAAVAFHSE SAGNSRRSCN AYKRERKSPK NPAVSYNEHA  180
ASSSDSETVR VVLSGQANTS NSLSVCTPTE CVVGNSECVV VEEDLFESFN LFTNLAEALL  240
LSPPPLFCIH EEEHNLEEGF LWSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-17581191172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1171015e-72FJ117101.1 Pinus taeda isolate 4346 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171035e-72FJ117103.2 Pinus taeda isolate 4361 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171045e-72FJ117104.2 Pinus taeda isolate 4349 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171055e-72FJ117105.2 Pinus taeda isolate 4355 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171065e-72FJ117106.2 Pinus taeda isolate 4347 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171075e-72FJ117107.2 Pinus taeda isolate 4348 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171085e-72FJ117108.2 Pinus taeda isolate 4359 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171125e-72FJ117112.1 Pinus taeda isolate 4345 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171135e-72FJ117113.1 Pinus taeda isolate 4356 anonymous locus UMN_6348_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-100D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-38ERF family protein