PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045448-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 276aa    MW: 31048.1 Da    PI: 8.5012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045448-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-132370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed +l+  ++ +G g W+  ++  g+ R++k+c++rw +yl
  PSME_00045448-RA 23 KGAWTQQEDARLIAHIRAHGDGAWRCLPKAAGLLRCGKSCRLRWINYL 70
                      79******************************99************97 PP
2Myb_DNA-binding605.2e-1976120147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  PSME_00045448-RA  76 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 120
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1441870IPR017930Myb domain
SuperFamilySSF466892.96E-2821117IPR009057Homeodomain-like
SMARTSM007174.7E-92272IPR001005SANT/Myb domain
PfamPF002493.2E-112370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-212477IPR009057Homeodomain-like
CDDcd001677.38E-72570No hitNo description
PROSITE profilePS5129429.42771125IPR017930Myb domain
SMARTSM007174.6E-1875123IPR001005SANT/Myb domain
PfamPF002493.5E-1776120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2878125IPR009057Homeodomain-like
CDDcd001675.05E-1378121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKSHDCLWRM GRCPCCEKVH TNKGAWTQQE DARLIAHIRA HGDGAWRCLP KAAGLLRCGK  60
SCRLRWINYL RPDLKRGNFT EEEDELIIKL HSLLGNKWSL IAGRLPGRTD NEIKNYWNTH  120
IKRKLLSRGL DRKTHCSLCN TTLGSPPANS DHELSALQSP RTAEMTDFFQ HDLSERSAIE  180
PDVASKGEEH PDLNLDLCIS LPSNSSLAEN RAVDSNFNSG RGLWRDDRGQ RKNSDGRCES  240
RYCVGNNAGS GCSSGAINGM FDIQLNALVP ERRLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-282212526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012541e-111BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.13e-84myb-related protein 308
SwissprotP813933e-84MYB08_ANTMA; Myb-related protein 308
TrEMBLA9NYS61e-109A9NYS6_PICSI; Uncharacterized protein
STRINGERM938821e-83(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-83myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]