PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045332-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 423aa    MW: 48906 Da    PI: 7.4588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045332-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16.2e-52401681128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPt+eel+ +yLkkkv+ +k++l +vi++vd++k+ePwd+++++k +++   +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  PSME_00045332-RA  40 VPPGFRFHPTEEELLYYYLKKKVSFEKIDL-DVIRDVDLNKLEPWDIQERCKIGSTpqhDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 131
                       69****************************.9***************9644443333359********************************* PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ + +++g++ktLvfykgrap+g+ktdW+mheyrl
  PSME_00045332-RA 132 AIHT-NFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL 168
                       ***9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5634197IPR003441NAC domain
PROSITE profilePS5100556.2940197IPR003441NAC domain
PfamPF023652.5E-2741168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MVYFARISLN FSYPLQQNSA AKPIWKSSGM TLSVNGQSRV PPGFRFHPTE EELLYYYLKK  60
KVSFEKIDLD VIRDVDLNKL EPWDIQERCK IGSTPQHDWY FFSHKDKKYP TGTRTNRATA  120
AGFWKATGRD KAIHTNFKKI GMRKTLVFYK GRAPHGQKTD WIMHEYRLDD AEYPQVNQQT  180
FNELQEDGWV VCRVFKKRNH HKSQESAESS PKYGSKQFSN NKILSDSDCP SDILTDPMHY  240
THQLNMCKQE LEMQQYAFPH DQFMQLPQLE SPKIPTCNNP PSSGIKRFFP DSRSGFFQLE  300
NIPSSKRPCN YPMTLDMTEL EGSTVTTHDH VSEFKPSDEI QNLQDWTVLD RLVASHLNGQ  360
EVETPKLEIR SYGAPNSSSD HQALVDAATA SGDHITLLPQ LRINRLNPHD YGSCEIDLWN  420
FVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-494020015171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6767970.0EF676797.1 Picea sitchensis clone WS02752_M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360199.11e-117PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-102NAC43_ARATH; NAC domain-containing protein 43
TrEMBLB8LLZ90.0B8LLZ9_PICSI; Uncharacterized protein
STRINGAquca_037_00272.11e-117(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.18e-85NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]