PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045329-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 336aa    MW: 36917.8 Da    PI: 5.0702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045329-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.6e-06235260227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C++++ tG  kyG++CkF+H++
  PSME_00045329-RA 235 GEKECPYYMCTGSYKYGATCKFHHSE 260
                       6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546952.93E-1534109IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.109.3E-1737109No hitNo description
PfamPF006511.5E-1147108IPR000210BTB/POZ domain
SMARTSM002259.1E-955161IPR000210BTB/POZ domain
PROSITE profilePS5009712.6655130IPR000210BTB/POZ domain
SuperFamilySSF480193.1E-6109152IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
PfamPF085422.2E-4109152IPR013748Replication factor C, C-terminal
Gene3DG3DSA:1.20.272.103.0E-9110152No hitNo description
PROSITE profilePS5010310.765234261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLESSDFVKD DTLKICCTVG VVVSAIQGPR LHYIHIPESN LGQQFGELLE DVENVDVTFD  60
VSGEKFHAHR VVLAARSLGF KSMFFESSGE WNDKEISIEG TRPEVFMIVP KEVVQSLFQS  120
CKTDQFDLAE KEVSDIIAEG HPASQIFSQL KRGEDFKPNS VTIVSVLLAC AHLAAVEQGK  180
EVHGYIVRNG FESNVSVGSS LIDMYGKCGS IDLSRQVAQY MSELPERVGQ PECKGEKECP  240
YYMCTGSYKY GATCKFHHSE PTALLPDSGS PVYAMTELSL SPASGSPYPA GLASWSLQKA  300
PYVFGPQLQG PSTYMPVIHS HQQSMPSVQP GWSTYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5izw_A3e-1912122712100PLS9-PPR
5izw_B3e-1912122712100PLS9-PPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1044311e-110BT104431.1 Picea glauca clone GQ02810_E19 mRNA sequence.
GenBankEF6771001e-110EF677100.1 Picea sitchensis clone WS02761_M15 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.13e-16zinc finger nuclease 2