PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045276-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 329aa MW: 37071.8 Da PI: 5.121

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045276-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	413	5.6e-127	106	322	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+p ++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00045276-RA 106 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 198 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkp+rafesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewh+yeyein +da+alyrle PSME_00045276-RA 199 ELFDMYVLEGESMREWLFFDKPQRAFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHIYEYEINYCDACALYRLE 291 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00045276-RA 292 LKMVYSKKNTKGKVGGDPLVDLQHQLGKLSA 322 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	6.6E-4	2	49	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTYVDYHMGA ESGYVHFEQP KMVQKPRAAA VLAEEGGNSY PQTSVQLPAN IEHQENNNYV 60 QTSEQLPPNL VEGLEDYIPD AQPIFTLTSE EETSPVFNGP QPGLCPPPAA FLGPKCALWD 120 CSRPAQGTKW CQDYCSDFHM TLASNEGAPR MRPVLRPGGI DLKDGPLFAA LSAKTQEKAV 180 GIPECEGAAT AKSPWNAYEL FDMYVLEGES MREWLFFDKP QRAFESGNRK QRSLPDYSGR 240 GWHESRKQVI KDFGGLKRSY YMDPQPSTQF EWHIYEYEIN YCDACALYRL ELKMVYSKKN 300 TKGKVGGDPL VDLQHQLGKL SAEFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	1e-133	PREDICTED: transcription factor VOZ1
Refseq	XP_019079230.1	1e-133	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-125	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A5CA22	1e-131	A5CA22_VITVI; Uncharacterized protein
TrEMBL	F6H4X2	1e-131	F6H4X2_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	1e-132	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-127	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]