PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045121-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family EIL
Protein Properties Length: 689aa    MW: 79049.2 Da    PI: 6.4344
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045121-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3149.64e-46297389198
                       XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLra 93 
                       +el+k+mwkd+++l+r+ke++k ++    +  +++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lra
  PSME_00045121-RA 297 DELEKQMWKDRIRLRRIKEQRKGKY----H-SDTAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRA 384
                       79********************987....2.467799******************************************************** PP

                       XXXXX CS
              EIN3  94 WWkek 98 
                       WWkek
  PSME_00045121-RA 385 WWKEK 389
                       ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.4E-42297389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MKNYDLDVGG SDLALMARGR YPHRGKPWSK PWNGDIGKQW NGDRGRFHQK HKGMAQIDSD  60
RNNVDCHHWG KPRHLNRNHY QKKFYRNRNY NGNFANTDIS EINDFKNLRL FIFEDALSVE  120
TNDENAWFID SVQEQEVEEP QEKYKEHNSR SSSERSKSRI STSTSSEEDI AESRRIMDGT  180
PTVLDLAAGP LHNWLWKNSC LFEEFFSCPT DTKKTNISRI NTGKRFSHFG VSFVFLQSII  240
KVWHSQLKVE VMGIYDEMGY PGNLDLLSVP LEGDSMCENE GEVMHDEGLS EDDIDVDELE  300
KQMWKDRIRL RRIKEQRKGK YHSDTAKQRQ SQEQARRKKM SRAQDGILKY MLKMMEVCKA  360
QGFVYGIIPE KGKPVSGASD NLRAWWKEKD CKPQDLDLVN SEQECKPQDF DHFNIGISNE  420
RVSSLLVGDN ADFIRKRKLP QEPPLEDQKV YTCPHEQCQY HERQLGFSDQ SLRNAHQSTC  480
AYRTDLQGMG FRRPEPQESK SLFCMSTGQS NQLQVQGKVS IFPSEKEGQM TSNGNVNLNP  540
LSTTSSAIPT SNQQPINELL ALYDGGLHQN KTATLGNLKM MNNHNQLEVN MHPASQGGEI  600
FKITPDDNFF GQGVVAGNNS NDFGSNMPLV MREGLNLDQS RVYDQAFIQQ CQEMNGDMKF  660
VSPYNNISVD YAVPETVPKY DNSIWYFGA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00367DAPTransfer from AT3G20770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1188900.0BT118890.1 Picea glauca clone GQ04011_I03 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.15e-51EIL family protein