PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044807-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 451aa    MW: 51347.8 Da    PI: 9.7969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044807-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-14453148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                      r+rW  eEd ll  +vk++G++ W++++++m+  + R +k+c +rw +yl
  PSME_00044807-RA  4 RQRWRSEEDSLLHSYVKRYGPREWNLVSQRMNkaLDRDPKSCAERWKNYL 53
                      89**********************************************97 PP
2Myb_DNA-binding27.38.2e-0959104148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k +  +w  y+
  PSME_00044807-RA  59 KGSLSEDEQRLVISLQAKYGNR-WKKIAAQVP-GTTAKRLSKWWEVYR 104
                       57789*****************.*********.*******99998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.798153IPR017930Myb domain
SMARTSM007173.9E-11355IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-194100IPR009057Homeodomain-like
CDDcd001676.97E-8653No hitNo description
Gene3DG3DSA:1.10.10.601.9E-18660IPR009057Homeodomain-like
PfamPF139212.8E-13768No hitNo description
PROSITE profilePS5129419.60854108IPR017930Myb domain
SMARTSM007172.3E-758106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1261103IPR009057Homeodomain-like
CDDcd001677.09E-563103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MKERQRWRSE EDSLLHSYVK RYGPREWNLV SQRMNKALDR DPKSCAERWK NYLKPGIKKG  60
SLSEDEQRLV ISLQAKYGNR WKKIAAQVPG TTAKRLSKWW EVYREKQDKI KDRKERIIAD  120
SANNTIEEGK YDHILETFAE KYMQKQKQLA TSSSSCNLPT IAAMPSGLPP PPISFSMPSS  180
STPDFIHFAI PSASTATTCS FGATPTPCLP PWMSNRPNSA HGAGTEAFRH SSPLSKSSPS  240
SSSSPSVTLS LSPSSSTPVM SGNTASASSS WMQDTARQSG ENNVSGDSEA AKEKTRGNNS  300
HAETQMPSMD PLSNLAASSH QAAADQGMIM QEISLFFKHC RELEERQQSW SIHKKETGWR  360
LKRLEQQLEA EKARKRREKM EEIESKVRAL REEETVYLDR LESDYREQLS RIHRDAEIKE  420
ARMMEMWTAK HVQLTKFFEQ MVHRHDPHKS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-15792789MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-15792789C-Myb DNA-Binding Domain
1msf_C7e-15792789C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127510.0BT112751.1 Picea glauca clone GQ03320_G13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.14e-61MYB family protein