PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044782-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Protein Properties

Length: 315aa MW: 35518.4 Da PI: 8.9917

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044782-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.4	1.2e-13	223	312	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f v+ +s v s +l +p++f ++ ++ ++++ l + + r+W v + + ++++ l+ GWk F+ +n+Lk gD+++F+l+++ + l PSME_00044782-RA 223 FTRVMNKSAVAHSFWLGIPRRFG-KCwF--PRANVEVLLLH-QTRKWPVLF--VGERSSCGLGPGWKYFAVDNELKIGDTCIFELEDKASYIL 309 667888999999********9.7744..34567788777.88***..66666677*********************987655545 PP EEE CS B3 93 vvk 95 +v+ PSME_00044782-RA 310 KVH 312 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-18	215	313	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-19	217	314	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.18E-15	221	313	No hit	No description
SMART	SM01019	1.6E-10	223	315	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.548	223	315	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-11	223	312	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MANGKSCRGC SEKCLRTHFY GHGSSFFKVM AGDFSSVLRT DITVFRRVNV AHFLVQIFEA 60 SGYEKINTST IKNCESHNVN KLGIYCTEAT TFRQSFKGNE QKRSAQGMGV KVEITGNCTE 120 AYISNVGLLS TRKHEFHGHP KTNVKHEPGL PKLNCHFSEN QVGSCVKHPI ILDSDEEYDS 180 QASLTYSTDQ DTEAVFSEVL QEKVSSLKEG KTSNSVKKDK PKFTRVMNKS AVAHSFWLGI 240 PRRFGKCWFP RANVEVLLLH QTRKWPVLFV GERSSCGLGP GWKYFAVDNE LKIGDTCIFE 300 LEDKASYILK VHIQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-12	B3 family protein