PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044193-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 138aa MW: 15811.4 Da PI: 6.2271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044193-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21	6.2e-07	98	122	5	29
HHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 5 hnerErrRRdriNsafeeLrellPk 29 + + Er+RR ++N+++ +Lr+l+P PSME_00044193-RA 98 NIILERKRRGKLNHWLYTLRSLVPF 122 5689********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.477	93	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-7	96	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.67E-5	97	127	No hit	No description
Pfam	PF00010	1.1E-4	98	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-5	100	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MDDQLQDQWW KDEEEYAIFS TCLEVSHNQS INALPNHLGA LSSREFDGQQ IESDSCPENK 60 CDLQNHSQRG NAYSEGSNHH SNGDIKSCKS GSFAANKNII LERKRRGKLN HWLYTLRSLV 120 PFITKVSFST TYLLPETY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29930.4	1e-07	bHLH family protein