PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042585-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 698aa    MW: 78447.7 Da    PI: 7.1758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042585-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.54.8e-30153237187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+laL+++r+em+ ++r+++lk+plWe+vs++++e g+ r++k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  PSME_00042585-RA 153 RWPRQETLALLKIRSEMDANFRDASLKGPLWEDVSRRLAELGYYRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFNQLEA 237
                       8*********************************************************************866665..*******85 PP
2trihelix103.61.5e-32497582187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k evl+Li++r+ +e+++++   k plWee+s++m+  g++rs+k+Ckekwen+nk+++k ke++kkr +e+ +tcpyf+ql+a
  PSME_00042585-RA 497 RWPKPEVLTLIKLRSGLEQKFKEPGPKSPLWEEISAAMANLGYNRSAKRCKEKWENINKYFRKAKESNKKR-PENAKTCPYFHQLDA 582
                       8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0059150212IPR001005SANT/Myb domain
PROSITE profilePS500906.516152210IPR017877Myb-like domain
CDDcd122036.84E-26152217No hitNo description
PfamPF138374.7E-21152238No hitNo description
PROSITE profilePS500907.108490554IPR017877Myb-like domain
SMARTSM007170.0011494556IPR001005SANT/Myb domain
CDDcd122038.10E-29496561No hitNo description
PfamPF138371.1E-22496583No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MQSSSQYGVP EVPAQFVVGR VPSSGAHSHI FSLAHDMTLS PKNSSPHPHP QPQSLHSSEQ  60
QQHGSNQQMI AHKIRLESDS PEVAAPSPGH PKLNNSNSNT ATNNYGSSNH NNSNISTTDN  120
YNKQQQQQEV VQLGGDEDVL GSEDCERGSA GNRWPRQETL ALLKIRSEMD ANFRDASLKG  180
PLWEDVSRRL AELGYYRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYR FFNQLEALYG  240
SSNSGNLNNM NSSNKKVTVA ISGASPALVG ILPIAAAPHF NQESKELDNS IAVKAAAKPV  300
NQTLDFSTAA AMSFSSSDSS EDEYDEPDDH DNDHNRKRKR PSSSSAESMV VFFENLMKQV  360
IEKQEAMQRK FMEAIEKREQ ERMIREEAWK RQEMARLSRE QELKSQERSL SASRDAALVA  420
FLQKVTGQTL QLIPPQFPSA PQLQLLEPPP PPPPPPPPPS ANQTDNVNNP NTDQDHQVVI  480
HNEDIKDLSS FDPNSKRWPK PEVLTLIKLR SGLEQKFKEP GPKSPLWEEI SAAMANLGYN  540
RSAKRCKEKW ENINKYFRKA KESNKKRPEN AKTCPYFHQL DALYKKRNLA NRQNKIMEKD  600
SAVNGNDQKM EDQETEELIE HERPSGSNRD QQGDHGADTL AIMPNAHGDQ THAYNHERTN  660
PNSNSTTRDA NSGFMAMVHK LTTDHPPEFN MSTSSNTE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0873410.0EF087341.1 Picea sitchensis clone WS02745_N15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-166trihelix transcription factor GTL1-like
TrEMBLA0A0D6QXM91e-170A0A0D6QXM9_ARACU; Uncharacterized protein
STRINGPP1S19_341V6.11e-165(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-72Trihelix family protein