PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00041851-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26554.7 Da PI: 6.1133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r ++ +g+Wv+eIr p + +r++lg++ tae Aa+a++aa ++l+g PSME_00041851-RA 46 QYRGIRKRS-WGSWVSEIRAP-----HqkTRIWLGSYPTAEAAARAYDAAVLCLKG 95 69****888.**********7.....335************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 45 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 46 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.46E-19 | 46 | 105 | No hit | No description |
Pfam | PF00847 | 5.2E-10 | 46 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-19 | 46 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-34 | 46 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVCTSKNSEC HQNLLIGSQQ HLERRECPVS SKARKKSSSG SGQPRQYRGI RKRSWGSWVS 60 EIRAPHQKTR IWLGSYPTAE AAARAYDAAV LCLKGSSATL NFPESATNIH IPQICQPLLM 120 SPRSIQKVAA AAAYGYSTDL AGSNGVECAA QSLQDSLEST VKTEVGTEAM PNNVNSNGDV 180 GLTEEISWLE QFLESPSRVN DYAYDQQMLC CAWLSPEIPT PLSNWVDEGY GQDLCSNLWS 240 FT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 45 | 103 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-28 | ERF family protein |