PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041506-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 308aa    MW: 35429.1 Da    PI: 8.1532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041506-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171561248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g+WT+ Ed +l ++++ +G g Wk Ia++ g++R++k+c++rw++yl
  PSME_00041506-RA 15 GAWTAMEDTILSEYIQIHGDGGWKNIAKRAGLKRCAKSCRLRWLNYL 61
                      89*******************************************97 PP
2Myb_DNA-binding51.32.8e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  PSME_00041506-RA  67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                       7899******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.436961IPR017930Myb domain
SuperFamilySSF466892.29E-2812108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002491.9E-151561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221568IPR009057Homeodomain-like
CDDcd001672.94E-101661No hitNo description
PROSITE profilePS5129425.17162116IPR017930Myb domain
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002497.6E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2569116IPR009057Homeodomain-like
CDDcd001677.24E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVRPPFPSKE GLNHGAWTAM EDTILSEYIQ IHGDGGWKNI AKRAGLKRCA KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HITKKLRMTM  120
NECQQKPSQN FSRSSKSPVP VQNRVFKVTA VKIKTAVRHS EMVRPNGYNG NDCRNQISVE  180
AFNLCTIKET RKSSWCDLLV KDSIEGEQSE RTVSPMADKP VQTAAINSIT SMWSLADQQC  240
TDCNHLARDA ANLAESLLNW NEISSPECSL LPSPSRDFAS VEFYREMEEF YDYAQQLDWI  300
HEFDHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ388511e-52MYB6_ARATH; Transcription repressor MYB6
TrEMBLB8LMJ61e-135B8LMJ6_PICSI; Uncharacterized protein
STRINGXP_004287618.12e-63(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.16e-55myb domain protein 6