PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041167-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 340aa MW: 38729.6 Da PI: 5.8465

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041167-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.4	2.6e-44	18	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 pGfrFhPt++elv +yLk+ v+gk +++ ++i+ +d+y++eP+dLp+ ++ +e+e++fF++rd++ ++ r+nr+t+sgyWkatg d++v++ PSME_00041167-RA 18 PGFRFHPTEQELVGFYLKRMVQGKLHNF-NFIPMLDLYRYEPSDLPRFASLSERELFFFVPRDERCQNnRGRPNRMTASGYWKATGCDRSVHN 109 9*********************9888.99***********76677899*****99986377****************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +gl+ktLvfy+grap+g+ktdW+m+ey+l PSME_00041167-RA 110 DNAKCIGLRKTLVFYRGRAPRGQKTDWIMNEYKL 143 999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-48	13	162	IPR003441	NAC domain
PROSITE profile	PS51005	48.134	16	162	IPR003441	NAC domain
Pfam	PF02365	1.5E-23	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEMNVGQQGL KEKLNELPGF RFHPTEQELV GFYLKRMVQG KLHNFNFIPM LDLYRYEPSD 60 LPRFASLSER ELFFFVPRDE RCQNNRGRPN RMTASGYWKA TGCDRSVHND NAKCIGLRKT 120 LVFYRGRAPR GQKTDWIMNE YKLPDSIDKP KKEVVLCRIY TKATPQKYLE QRAMSQAEVA 180 STSEDLDCIS QDSQISRAKI DENKLAQEAK SICVWDSDSA ACHEIRTEQN RTKADRISSL 240 GSSLGRGPVD STGYGNLVDP DFQELVDDDK GAEEFSSVIA MLNSSPSPSS SVECCWELPE 300 MAEGLRSVQI PKRSIDLRNE EAPSDGKWKT WTDLWSLSSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-38	13	162	12	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085463	0.0	EF085463.1 Picea sitchensis clone WS0271_F01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093751.1	2e-64	NAC domain-containing protein 35
Swissprot	Q10S65	2e-62	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A9NVV7	1e-159	A9NVV7_PICSI; Uncharacterized protein
STRING	GRMZM2G126817_P01	9e-63	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	8e-64	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]