PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041093-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 320aa    MW: 35185.2 Da    PI: 4.3806
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041093-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-25147199155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv+av+ L G++ ++Pk ilelm+v+gLt e+v+SHLQkYRl
  PSME_00041093-RA 147 KPRVVWSVELHQQFVNAVNTL-GID-TIPKWILELMNVQGLTQENVASHLQKYRL 199
                       79*******************.888.8***************************8 PP
2Response_reg68.13.9e-23301341105
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ + ll+++l++ +y + +++ ++  al ll+e++  +Dl+++D+ mp+mdG++ll+     e +l +i+++a+ge + + + + 
  PSME_00041093-RA  30 VLVVDDDPICLLLLENFLRRCQY-NFTSCGQAITALSLLRENRdkFDLVIIDVYMPDMDGFKLLELVGL-ELDLHVIMMSANGETSAVMKGIT 120
                       89*********************.***************998889*******************98844.457******************** PP

                       TTESEEEESS--HH CS
      Response_reg  92 aGakdflsKpfdpe 105
                        Ga d+l Kp d e
  PSME_00041093-RA 121 HGACDYLLKPDDDE 134
                       **********5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.8E-3128134No hitNo description
SMARTSM004485.9E-2528140IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.7E-2928134IPR011006CheY-like superfamily
PROSITE profilePS5011034.81229144IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2030134IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.12E-2231130No hitNo description
Gene3DG3DSA:1.10.10.602.8E-26144204IPR009057Homeodomain-like
SuperFamilySSF466891.45E-16144203IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21147199IPR006447Myb domain, plants
PfamPF002499.9E-6149198IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRVAEIYEIY RVKVMNNEEA NDDFPIYMRV LVVDDDPICL LLLENFLRRC QYNFTSCGQA  60
ITALSLLREN RDKFDLVIID VYMPDMDGFK LLELVGLELD LHVIMMSANG ETSAVMKGIT  120
HGACDYLLKP DDDEDEHDIE DPSTSKKPRV VWSVELHQQF VNAVNTLGID TIPKWILELM  180
NVQGLTQENV ASHLQKYRLY LKRLSGVASQ HGSMGNAFGG GRESSFGSLY QVDGIGDLQV  240
LAQSVQLSAR ALESLQVGVL GILNGSVGLG LLGLNSSGIL QFDSLLGLSC NNSIGRAQGI  300
APVNNPMNAF PCLSTGLELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-20147202157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572552.11e-92two-component response regulator ARR12 isoform X1
RefseqXP_025012481.11e-92two-component response regulator ARR12 isoform X2
SwissprotO493971e-66ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A2P5XZ534e-94A0A2P5XZ53_GOSBA; Two-component response regulator
TrEMBLA0A445K1074e-94A0A445K107_GLYSO; Two-component response regulator
STRINGXP_002515447.12e-92(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.13e-50response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]