PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041049-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family DBB
Protein Properties Length: 270aa    MW: 29686.4 Da    PI: 4.6311
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041049-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.5e-07447542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ +e+  ++  C  ++  lC +C  + Hk       H++ pl
  PSME_00041049-RA  4 QCDACEQAAASVICCADEAALCTECDIKVHKAnklaskHKRLPL 47
                      6*******9*********************88899999998775 PP
2zf-B_box315.1e-105486335
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                        +C+ +++k ++ fC +++ +lC+dC ++ H+
  PSME_00041049-RA 54 LSRCDICQDKAAIVFCLEDRAMLCRDCDESVHS 86
                      679*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
CDDcd000211.31E-6347No hitNo description
SMARTSM003362.5E-8447IPR000315B-box-type zinc finger
PfamPF006431.5E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.8835299IPR000315B-box-type zinc finger
SMARTSM003361.4E-135299IPR000315B-box-type zinc finger
PfamPF006435.1E-95495IPR000315B-box-type zinc finger
CDDcd000215.57E-85698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRIQCDACEQ AAASVICCAD EAALCTECDI KVHKANKLAS KHKRLPLIET SPKLSRCDIC  60
QDKAAIVFCL EDRAMLCRDC DESVHSPDTL AAKHQRFLAT GIRVALNPQS SESHGLTEFN  120
KQPIPVSNST APVQDGSRMG STNSSSAKPM PYGEQYWSVD ELLPLPDFES KGDPDGLGEF  180
DWEVDDFDHL GLFAQDQDQE DALACRVPQM SPTVPAGGRP SFTVKGKSKV EIQTVPDFDE  240
ACIVPDIGSM DEFHPTPPPK RMRRSSFEAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQL71e-154C0PQL7_PICSI; Uncharacterized protein
STRINGA0A087HLD14e-64(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.17e-61DBB family protein