PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00041022-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30729.9 Da PI: 8.6425 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.8e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl PSME_00041022-RA 34 KGAWSKEEDEILIAYIQAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 81 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.3e-19 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+v+++ lG++ W++Ia++++ gRt++++k++w+++ PSME_00041022-RA 87 RGNFSQEEDELIVKLHSILGNK-WSLIASKLP-GRTDNEIKNYWNTH 131 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 25 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.805 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-30 | 33 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 34 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 28.612 | 82 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 85 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-18 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 87 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.30E-13 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
VISCSYGILV KKPYQCHYSE MGRTPCCEKA HTNKGAWSKE EDEILIAYIQ AHGEGCWRSL 60 PKAAGLQRCG KSCRLRWINY LRPDLKRGNF SQEEDELIVK LHSILGNKWS LIASKLPGRT 120 DNEIKNYWNT HIKRKLLPIR GKDPYNTHLP VKPGHGSSFQ SSSEYIHVLP NRRCKPNEVF 180 TDFFQQQQQV NPGTWSGQKI ISTSHQDVDL ELSITLPSLS CSAEQGASSN NSKQLSIGIR 240 QSNDFIKQDH QKREICCHIG LQTVGGSCCS DC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 33 | 136 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596010.1 | 3e-82 | PREDICTED: transcription repressor MYB4 | ||||
Swissprot | Q9SZP1 | 2e-78 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A222UB09 | 3e-93 | A0A222UB09_GINBI; R2R3MYB1 | ||||
STRING | Bo7g119670.1 | 1e-81 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-79 | myb domain protein 3 |