PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040153-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 228aa    MW: 25936.9 Da    PI: 10.5283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040153-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15177211135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  TplWR++pdg+k+L naCG++++k g+
  PSME_00040153-RA 177 CAECKTNRTPLWRNDPDGPKSLYNACGIRFKKIGK 211
                       ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.266171207IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-12171223IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-10171217No hitNo description
Gene3DG3DSA:3.30.50.107.6E-14175212IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.97E-9176210No hitNo description
PfamPF003201.6E-13177211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLRGALCPRQ MHGHNHYKKF WLKKMEETED EQTQDSLRTL QPEGFGSRIF WYSNESFRSS  60
LEIKDRIRST IRVSSVRSGA GSKNCERNLA ASEKDLPDGS EFHRALSIGM QCICLMMPRN  120
KAGSLLIFFL CNKKATRKES CRKMERKVAP KKIGENRLVK TGAMDAEFLD AAVARTCAEC  180
KTNRTPLWRN DPDGPKSLYN ACGIRFKKIG KREQQKAGSR LPSVSSVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028484e-69BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.14e-14GATA family protein