PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039541-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 241aa MW: 26431.7 Da PI: 4.0517 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 122.5 | 4e-38 | 141 | 226 | 1 | 86 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaata 86 ppp aflgpkcal dc+rpaqgs+w+qdyc +fh ++alneg+pg+ pvlrp+gidlkdgllfa+l ak+ k gi ec+g +t+ PSME_00039541-RA 141 PPPEAFLGPKCALLDCPRPAQGSNWCQDYCRNFHGMVALNEGPPGMGPVLRPRGIDLKDGLLFATLGAKTVVKYFGITECQGVTTK 226 89********************************************************************************9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MLEASLCSSD LSCDMWNLLQ LHEEEDDATS ILVAPYSSKL QLNENTLDAT NPSSFQEVIP 60 PNEIRKDFYV DHANAEAQNI DGTSSSENIL TESLLQTTNE GLEAAAQMNQ DFDHNICLSL 120 DPEVEEEHIP KFQGPCPGIS PPPEAFLGPK CALLDCPRPA QGSNWCQDYC RNFHGMVALN 180 EGPPGMGPVL RPRGIDLKDG LLFATLGAKT VVKYFGITEC QGVTTKIITL ECSWYGINIL 240 Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 3e-44 | vascular plant one zinc finger protein |