PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 363aa    MW: 41245 Da    PI: 4.7621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.21.2e-4771441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee........vikevdiykvePwdLp..kkvkaeekewyfFsk.rdkkyatgkrknratk 79 
                       lppGfrFhPtdeelv++yL+ kv++++       +        +i+++d+yk+eP dLp  +++++++++w+fF++ +++ky++g rknrat+
  PSME_00039282-RA   7 LPPGFRFHPTDEELVCYYLRGKVSESTsksK---SkskaldlnAITDIDLYKYEPYDLParACFQGGDRQWFFFTEgNRNKYPNGLRKNRATE 96 
                       79**********************9995550...3445555657**************9644889999******983567899********** PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        gyWk+tg+d++vls k++lvg+kktLvf++gr+p+  +t+Wvmheyrl
  PSME_00039282-RA  97 GGYWKTTGRDRPVLS-KRALVGMKKTLVFHRGRSPNVFRTNWVMHEYRL 144
                       ***************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-544168IPR003441NAC domain
PROSITE profilePS5100554.5617168IPR003441NAC domain
PfamPF023654.7E-278144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGNLNCLPPG FRFHPTDEEL VCYYLRGKVS ESTSKSKSKS KALDLNAITD IDLYKYEPYD  60
LPARACFQGG DRQWFFFTEG NRNKYPNGLR KNRATEGGYW KTTGRDRPVL SKRALVGMKK  120
TLVFHRGRSP NVFRTNWVMH EYRLVNDEVG ESSRSETDRF VLCRVFLKSG SVAKTGEQHE  180
ALFSREYSRS TDNQSALVME DEQYGDIMLS PAWEVEEEER NSPLGPLTAA PEENTFPLDD  240
DISKFLLECL NEPDNDQTAC DLLQIPVGVD KWSSLIDEPF AEMQGIGPFS DEAGNLIRND  300
THKHNIAEER LHTERDVHRV ESMHGADTVE QPNFEALWSP ACLGGGYLEL NDLISPLQSN  360
SFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-42717415174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101544.17e-57NAC domain-containing protein 53 isoform X2
TrEMBLB8LPQ00.0B8LPQ0_PICSI; Uncharacterized protein
STRINGXP_008232318.15e-56(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-54NAC domain containing protein 53