PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039151-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 265aa    MW: 30497.8 Da    PI: 10.1807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039151-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-1693138148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00039151-RA  93 RGNISSDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 138
                       78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.7624487IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-107399IPR009057Homeodomain-like
SuperFamilySSF466892.76E-2073143IPR009057Homeodomain-like
PROSITE profilePS5129426.13688142IPR017930Myb domain
SMARTSM007171.1E-1592140IPR001005SANT/Myb domain
PfamPF002499.2E-1593138IPR001005SANT/Myb domain
CDDcd001679.09E-1297138No hitNo description
Gene3DG3DSA:1.10.10.601.8E-21100138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVPSHLAIAS ARHSPRSFQA SEKQLTIPLS HNTRMHDNTR SPVKHGRYDF ERIHQQSWLH  60
WLLEISVEQS RLKRSGKSCR MRWLNYLRPD IKRGNISSDE EELIIRLHRL LGNRWSLIAG  120
RLPGRTDNEI KNYWNTHLSK KLSVVTEINS KRRSSQSADR DQGIVKCKAI KAATMPMVNN  180
CPDKIGMTTL VKMDFSKSLW QLVMKTIHDT ARSSFPTVPE FPSSEQFAGN YADVDAYCDI  240
FSDSGRDFNL LSSPFDSKNF ICFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-187414240108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-31MYB family protein