PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039100-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28463 Da PI: 6.7602 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g+W+ I+++ g gRt++++k++w+++l PSME_00039100-RA 14 RGAWTAKEDMILSQYIQIHGDGSWRNIPKKAGrlPGRTDNEIKNYWNTHL 63 89*********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-21 | 5 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.768 | 9 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-15 | 9 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 14 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-13 | 16 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSPCCSEE GLNRGAWTAK EDMILSQYIQ IHGDGSWRNI PKKAGRLPGR TDNEIKNYWN 60 THLTKKMLSM AQSQHNSTKN LKTRSKTTPV KVPVFKTTPV RIKTVVRQPE MEILSGSNGY 120 GCSYLSSHKV FNSCNVKETT NSSKACCDVL VNHAIIADDS DRIPFSPADN NMVGMEARNC 180 NIPMLSLGEE RTPDYNYFAG LPESLLNLNN LYSPDCNLLS SLLDAESEEF CNSFTNADSQ 240 AMEKFFDNTT HTLDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 2e-66 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 8e-23 | myb domain protein 111 |