PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038752-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 361aa    MW: 40136.6 Da    PI: 10.1645
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038752-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-32290343255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PSME_00038752-RA 290 PRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 343
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15287343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28288343IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23290343IPR006447Myb domain, plants
PfamPF002496.5E-7291342IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPEKRLGAEY YESDEGSCLP DLSLQISLPE SSKSSRAGPD DRGFDLWRKT QKSNNGLANP  60
SEGSTTCSKK KCGDNTNDLS LIQASASSLK GSCNMRRVAD EAGRRYSAVI MQRTGIDYGT  120
ANLPIKGVPV YTCNSFLSVP HPELRAEARS YVNGAADKCS LDPKMVFCAK PQAEKQVPVF  180
SGYYQSINMP GSYNNSNVDQ LNLRGHQHHQ RQLESLLLLR NLQEGRGETA INPAGVFSAV  240
SQTYLNRPGS ISEVLDSHRF MTGPTRTNFE RSVRSRFMAK MPMKRSMRAP RMRWTSTLHA  300
HFVHAVELLG GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKTTDKP GASPGKFKRR  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16291345458Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-44G2-like family protein