PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038587-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 394aa    MW: 43176.9 Da    PI: 9.3448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038587-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-072252347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                      +W++Ia ++  gRt +++k++w+++
  PSME_00038587-RA  2 QWSLIAGRLS-GRTNNEIKNHWNNH 25
                      4*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.853130IPR017930Myb domain
SuperFamilySSF466894.32E-6230IPR009057Homeodomain-like
CDDcd001673.41E-4226No hitNo description
Gene3DG3DSA:1.10.10.607.8E-10227IPR009057Homeodomain-like
PfamPF014905.1E-1064143IPR013057Amino acid transporter, transmembrane domain
PfamPF014902.5E-8170240IPR013057Amino acid transporter, transmembrane domain
PfamPF014903.1E-13244384IPR013057Amino acid transporter, transmembrane domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MQWSLIAGRL SGRTNNEIKN HWNNHIKRKY SPKIVFENGT SSSRSLPRED SPLLPDHSQS  60
GPLSSLPKSS GNILIAIVGA GFLGLPYTFM KTKWLAGIIM LGIIAGITYY YIMLLVCTKR  120
KLESGSHVKI GSFGDVGFLV SGDVDRDGRG CVALYEEYSL FGGFTGFGMI PYGIGVAIYA  180
FKGIGMMVPL EVEADKKYKF RQILGLPIFF IAITYGGFGI LGFCAFGFGT RDIITLNMGR  240
TRGFGILGFC AFGFGTRNII KLNMGRNWVT FIIQVALCLN FFFTFPLMVN HVHEVVESKV  300
NRGQYSSFLM SLFVLLTTIV ALLVPNFVDF LSLVGSSVCC ALGFVALAAF HLISCKEDCS  360
MNQVIADVLI IGFCMVFAVI GTISSIKHIF SSRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8Q66e-78A0A0D6R8Q6_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-09myb domain protein 6