PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038429-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 409aa    MW: 46105.1 Da    PI: 4.6773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038429-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05254279123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+k +++ + L+ H+r+ H
  PSME_00038429-RA 254 FSCPyeGCNKFYKHEYKLNLHLRReH 279
                       89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-6106133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11109133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411109138IPR007087Zinc finger, C2H2
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4135158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100138162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-7159177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.7E-7250277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.328254284IPR007087Zinc finger, C2H2
SMARTSM003550.0052254279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280256279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDEAKEVIET LTSILNKKEV CKNQEAEITL LRKELEEKDT QLSTHLNFGK SATIRMEEAR  60
KAEEKPRSYT LESSSHNNGK KEEEDTVKAL EERPQEEEPL PEPEYEVAFL CRTEGCGQIF  120
TEATAMRKHA QQHMEKPLIC SNEGRGRKFP DVTKQKKHLL MHSGEKQFVC SFEGCGKGTH  180
TRVDIEVQIL ARVLVEGSTV VGKALESLIE QAGDDRRGDN CVPDVKSTPL VEKESVNPRL  240
LTSNAGAATL DRPFSCPYEG CNKFYKHEYK LNLHLRREHP GPTYEENEKQ VRTSDVEDEM  300
DEGSEHDENA GKVGIISSSG RGKLRIISKP SPGSSLKRKH SSVAPVDLNI KANPKVPIGR  360
SGLFAKEESE EDSEETEEDK EDTEDEGWGN RMNMETEDED DEETEDERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1238940.0BT123894.1 Picea sitchensis clone WS04718_G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ACC01e-121D5ACC0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.29e-40C2H2 family protein