PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00038304-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21373.9 Da PI: 8.4767 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7.2e-42 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq ++l++e PSME_00038304-RA 38 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQAQSLQSE 130 7******************************************************************************************** PP DUF260 94 lallkee 100 l+++++e PSME_00038304-RA 131 LNSVRAE 137 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.416 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-41 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
ENFENLSRRA SFQQLADADR MGRRQILGPP GALNTITPCA ACKLLRRRCA QECPFSPYFS 60 PHEPQKFASV HKVFGASNVS KMLLEVPESQ RADAANSLVY EANVRLRDPV YGCMGAISSL 120 QQQAQSLQSE LNSVRAEIMR YKFRSDAAVM HHQPPGQSSH QASMMPSSST VYSQGSASTD 180 YTAINDHHSN YYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-45 | 38 | 141 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-45 | 38 | 141 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102233 | 0.0 | BT102233.1 Picea glauca clone GQ0171_H05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821727.1 | 5e-86 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 8e-72 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3S3NG72 | 3e-85 | A0A3S3NG72_9MAGN; LOB domain-containing protein 15 | ||||
STRING | Gorai.009G295000.1 | 4e-84 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-69 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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