PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00038161-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Nin-like

Protein Properties

Length: 468aa MW: 51372.5 Da PI: 4.7896

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038161-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.7e-28	329	378	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+l++ls+yF++pi++AAkeL+v+lTvLK++CR++GI+RWPhRk+ksl PSME_00038161-RA 329 TDITLSELSHYFNMPITQAAKELKVGLTVLKKRCREFGIPRWPHRKMKSL 378 68**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.838	315	398	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-23	331	378	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MPRNSELFDI SPFPEDLNIV DDIFETKDLL DPSDSIPSLC ESSDITDPAS CSLSKPLSLQ 60 SNPPEWDISN WSSIPAASIV SEIMNPTNEF PAEDQVLAGG LNQNTELSWG DKLPNIQISS 120 PRRLPGSLIS FSSLHPHCDE LYTGTLSLFS PSSSNIYVDV KPKVQIADDR HGGYCSSIYI 180 CNEELPSDQL SGFANLQVEV PPTCEQIYDN KQLGLCSDLV CNFGSCLETT PGLSSDESIG 240 TSHQNLCPPT NMAGAEGIEY TFPPFYNLHS MPETPNPIYA SNSPSIIRDD PSYINSSWTG 300 VNNKTAISSG PSAQSRAGSH QRGSTDRITD ITLSELSHYF NMPITQAAKE LKVGLTVLKK 360 RCREFGIPRW PHRKMKSLES LIHNIQELGK NNGGLSNARL RNAVQILEEQ KRLMEEMPGI 420 ELAERTKRLR QACFKASYKK RRQMAMESAN QGCSDGSTSS ASATQASI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MPRNSELFDI SPFPEDLNIV DDIFETKDLL DPSDSIPSLC ESSDITDPAS CSLSKPLSLQ  60
SNPPEWDISN WSSIPAASIV SEIMNPTNEF PAEDQVLAGG LNQNTELSWG DKLPNIQISS  120
PRRLPGSLIS FSSLHPHCDE LYTGTLSLFS PSSSNIYVDV KPKVQIADDR HGGYCSSIYI  180
CNEELPSDQL SGFANLQVEV PPTCEQIYDN KQLGLCSDLV CNFGSCLETT PGLSSDESIG  240
TSHQNLCPPT NMAGAEGIEY TFPPFYNLHS MPETPNPIYA SNSPSIIRDD PSYINSSWTG  300
VNNKTAISSG PSAQSRAGSH QRGSTDRITD ITLSELSHYF NMPITQAAKE LKVGLTVLKK  360
RCREFGIPRW PHRKMKSLES LIHNIQELGK NNGGLSNARL RNAVQILEEQ KRLMEEMPGI  420
ELAERTKRLR QACFKASYKK RRQMAMESAN QGCSDGSTSS ASATQASI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	4e-42	RWP-RK domain-containing protein