PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037801-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 353aa    MW: 39924.4 Da    PI: 6.1823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037801-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.84.8e-56553422286
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL++cAea s++ + la+ + +rl+el sp+g++++R+a y+  AL +  ++  +++    + s+t+ +++++ l alkl++ ++P++++ 
  PSME_00037801-RA  55 LHLLTACAEATSQEAQDLAEVIFCRLQELISPTGSTIERVAYYLCDALLHFHLK--QNID---HKSTTRYSTEEHFLGALKLLHVAFPYIRIP 142
                       69**********************************************999888..3444...34444444488999**************** PP

              GRAS  95 hltaNqaIleavege.....erv..HiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgv 174
                       h+taNq Ileav+ +     + v  HiiDfdi++G+QWp+L++aL s    +g+  lRiT+++ ++++         ++tg+rL+++A+++g+
  PSME_00037801-RA 143 HFTANQCILEAVAAAtaagaNNVgiHIIDFDIMKGMQWPPLMEALRSNGnyDGTNYLRITAIKWADHNdddqCLLYSSHTGRRLSEYASSVGM 235
                       ***********99876565544455********************9877778999*******99887766555566789************** PP

              GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve..qeadhnsesFlerflealeyys 265
                       pf f+    ++le l  ++  v+++E ++Vn++ ql +++  ++  +s+  ++L   ++l+P  v+++   + a++n+++Fle f+++le   
  PSME_00037801-RA 236 PFLFQE---TNLEGL--KNVVVEEREIVIVNCIWQLPHMF--NLRNRSQLLQFLVGARHLNPVAVTLATgpHGAERNRATFLESFCRCLEELC 321
                       *****8...356655..8999******************9..7777778899***************973366999***************** PP

              GRAS 266 alfdsleaklpreseerikvE 286
                       + fds+ea+  ++  ++++  
  PSME_00037801-RA 322 TTFDSFEAGCRSKVLQERWWN 342
                       ********9877665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.98828353IPR005202Transcription factor GRAS
PfamPF035141.7E-5355342IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSDAELQDDN NNVVKYVTTS RGIDQQVCNC VVKVTNNISK SRVVEDMEYK GFRILHLLTA  60
CAEATSQEAQ DLAEVIFCRL QELISPTGST IERVAYYLCD ALLHFHLKQN IDHKSTTRYS  120
TEEHFLGALK LLHVAFPYIR IPHFTANQCI LEAVAAATAA GANNVGIHII DFDIMKGMQW  180
PPLMEALRSN GNYDGTNYLR ITAIKWADHN DDDQCLLYSS HTGRRLSEYA SSVGMPFLFQ  240
ETNLEGLKNV VVEEREIVIV NCIWQLPHMF NLRNRSQLLQ FLVGARHLNP VAVTLATGPH  300
GAERNRATFL ESFCRCLEEL CTTFDSFEAG CRSKVLQERW WNAYSLGRPC VGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-23543404286GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-37GRAS family protein