PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037120-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26880.4 Da PI: 8.4345 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.1e-41 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC+ +C+lapyfp +qpk+f n+hklFG+sn+l++lk++++++++dam+s++y+A+ar +dPv+G++g+i lq ++e+l++e PSME_00037120-RA 10 ACAACKFQRRKCSVECPLAPYFPPDQPKQFLNAHKLFGVSNILRILKQVDDSKKSDAMKSMIYQANAREKDPVHGCFGIIIMLQTRIERLREE 102 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+l+++++ PSME_00037120-RA 103 LELVRSQI 110 ***99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.69 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-40 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAGKGGTGQA CAACKFQRRK CSVECPLAPY FPPDQPKQFL NAHKLFGVSN ILRILKQVDD 60 SKKSDAMKSM IYQANAREKD PVHGCFGIII MLQTRIERLR EELELVRSQI MFLDQVYQSR 120 DYFNIPQKQQ QQQLQLQSLG NAGGHVSQQA LPASWIYPYV QQSPYAAYDG NGALYRQAYD 180 LRPNKLLVYN DHGQAYSDSK DAYESSAESS LKDSQSMEHV AERELKSAAA LFTLTNQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 6 | 111 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 6 | 111 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511502.1 | 2e-58 | LOB domain-containing protein 27 | ||||
TrEMBL | B9R927 | 4e-57 | B9R927_RICCO; LOB domain-containing protein, putative | ||||
STRING | XP_002511502.1 | 7e-58 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-37 | LOB domain-containing protein 27 |