PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037045-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 60aa MW: 6936.02 Da PI: 4.6248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.2 | 5.2e-09 | 23 | 49 | 2 | 28 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkl 28 pGfrF Pt+eel+++yLkk++++ + PSME_00037045-RA 23 IPGFRFYPTEEELLSFYLKKRIQSGHQ 49 69********************98873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-9 | 14 | 49 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.673 | 22 | 60 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-6 | 24 | 47 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MAMAILEEIY NDAGAFKGEL TVIPGFRFYP TEEELLSFYL KKRIQSGHQL NFDIRPAIEI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 2e-10 | NAC domain protein 66 |