PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036198-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 285aa    MW: 32374.4 Da    PI: 5.2244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036198-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-1428101246
                       SSS-HHHHHHHHHHHHHTTTT..............................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............................tWktIartmgkgRtlkqcksrwqk 46 
                        + T++E+ l+v++++ lG++                              +W++Ia+ ++ gRt++++k++w++
  PSME_00036198-RA  28 CKITPQEESLIVELHRSLGNRyskllmkwagcliscqhiclsvfmviiemvRWSRIAQSLP-GRTDNEIKNYWRT 101
                       577**********************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.472121IPR017877Myb-like domain
SuperFamilySSF466895.19E-11725IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-10751IPR009057Homeodomain-like
PROSITE profilePS5129413.32522107IPR017930Myb domain
SMARTSM007171.7E-926105IPR001005SANT/Myb domain
PfamPF002496.0E-1128101IPR001005SANT/Myb domain
CDDcd001671.17E-631101No hitNo description
SuperFamilySSF466895.19E-1175104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1679104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYCAGLKRSG KSCRLRWINY LRPDLKRCKI TPQEESLIVE LHRSLGNRYS KLLMKWAGCL  60
ISCQHICLSV FMVIIEMVRW SRIAQSLPGR TDNEIKNYWR TRMKRKMNLQ AESSSSSGMD  120
ADNKELLESS MCSHDYFTTS SQILPGLNSA EPSTRFTRQT TEEREFQTKK VAYLEADISP  180
SSEKDFTNGL QDETRHGSCP INEEYGQQSA ALQEHLEGSD EVFENGGLPY TFSVGSLATL  240
LPFELFADDG TTQDPSYMVA SPEAFTGCGS YWNCNSDVLW NMHDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104RTRMKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-31myb domain protein 62