PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035860-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 170aa    MW: 18991.6 Da    PI: 9.0414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035860-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-15653148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT++Ed+ l + +  +G g+W++++++ g++R++k+c+ rw +yl
  PSME_00035860-RA  6 RGPWTQDEDLCLTQFIGAHGEGRWSSVPEKTGLKRCGKSCRFRWVNYL 53
                      89********************************************97 PP
2Myb_DNA-binding36.21.4e-115995139
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt+++
  PSME_00035860-RA 59 RGNISQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNE 95
                      7899******************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.476157IPR017930Myb domain
SuperFamilySSF466896.53E-25495IPR009057Homeodomain-like
SMARTSM007172.8E-12555IPR001005SANT/Myb domain
PfamPF002496.3E-14653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-21760IPR009057Homeodomain-like
CDDcd001673.47E-9853No hitNo description
SMARTSM007172.1E-458100IPR001005SANT/Myb domain
PROSITE profilePS5129410.38658101IPR017930Myb domain
PfamPF002497.0E-105995IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-166195IPR009057Homeodomain-like
CDDcd001674.25E-76395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDGLNRGPWT QDEDLCLTQF IGAHGEGRWS SVPEKTGLKR CGKSCRFRWV NYLRPSVKRG  60
NISQDEEDLI IRLHKLLGNR WSLIAGRIPG RTDNESIKPR KPNISEPAVS LLTPTSANQE  120
GEKEKVICCP VTEDLKNRPT SSNYPMKQKA SSSSDPGKLA AVSAEMDLWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2249425114MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045022.22e-51PREDICTED: transcription factor TT2
SwissprotQ9FJA25e-47TT2_ARATH; Transcription factor TT2
TrEMBLA0A061EEZ84e-49A0A061EEZ8_THECC; Myb domain protein 4, putative
STRINGXP_008220563.18e-51(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-49MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]