PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035556-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 515aa    MW: 56462.3 Da    PI: 9.7409
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035556-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-12180228155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  +++Aa+a+++a+ k++g
  PSME_00035556-RA 180 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNREQDAARAYDRAAIKFRG 228
                       78****9888.8*********3.....5**********99*************98 PP
2B3102.22.8e-32295399199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ tpsdv+k++rlv+pk++ae++       +g+k +++ l++ed++ ++W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++
  PSME_00035556-RA 295 FDKTVTPSDVGKLNRLVIPKQHAEKYfsldvasDGSKGKGVLLSFEDSTDKTWRFRYSYWNSSQSYVLTKGWSRYVKEKRLQAGDIVTFERSS 387
                       89*******************************99999****************************************************655 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                         +++l+++++r+
  PSME_00035556-RA 388 -PSRHLFITFRRR 399
                       .888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-17180236IPR016177DNA-binding domain
CDDcd000187.88E-14180235No hitNo description
Gene3DG3DSA:3.30.730.103.8E-21181236IPR001471AP2/ERF domain
SMARTSM003801.1E-26181242IPR001471AP2/ERF domain
PROSITE profilePS5103219.454181236IPR001471AP2/ERF domain
PfamPF008472.8E-7181228IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.2E-40284401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-31290402IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-28293398No hitNo description
PfamPF023628.6E-29295399IPR003340B3 DNA binding domain
PROSITE profilePS5086314.085295399IPR003340B3 DNA binding domain
SMARTSM010192.8E-23295400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MRLIAFPTVK RALGIPHDSK VSDLGLIKAQ SGWFRRRISG TVMAGTVQAV SCNLLKAIGN  60
DNCDMGLSLG RCSYSPVNDE SFGNSSEPKP NSNLTVVSVK KTVQGDLTRT GNEEGAGSVT  120
EDHESNRGNS VCSISSNSFA DRGKLERMES GMSTVSSSEN TANIPSAQGD ENSCKKLPSS  180
QYKGVVPQPN GRWGAQIYEK HQRVWLGTFN REQDAARAYD RAAIKFRGAE AITNFNSVDS  240
HPEAGFLRGH SKYEIVDMLR KHTYEEELGQ CKSASHINGE LVARSSPSEP REHLFDKTVT  300
PSDVGKLNRL VIPKQHAEKY FSLDVASDGS KGKGVLLSFE DSTDKTWRFR YSYWNSSQSY  360
VLTKGWSRYV KEKRLQAGDI VTFERSSPSR HLFITFRRRP CSFLPPAAPL PLPKRCLQSV  420
DPFAVVGGGY PQWAQFFYAP PPLINAVTQS SIPGRASSDS VTKALEPSTD GNSLSSSSSV  480
RLFGVNLQRS PLNFSLGRTI EEDGTGNAKK RKAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-472914004114B3 domain-containing transcription factor NGA1
5os9_B5e-472914004114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843763.21e-103AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A0C9RTQ61e-114A0A0C9RTQ6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_13646_1859 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.15e-99ethylene response DNA binding factor 3