PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00034941-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 259aa MW: 28961.4 Da PI: 5.1757 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 307.3 | 1.2e-94 | 101 | 259 | 1 | 159 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp++flgpkcalwdc+rpaqg++w+qdy s fh tla neg+pg++pvl p+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00034941-RA 101 PPPATFLGPKCALWDCSRPAQGTKWCQDYYSDFHMTLASNEGAPGMRPVLCPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 193 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdp 159 elfd+ +lege++rew+ffdkprrafesgnrkqrsl dysgrgwhesrkqv+k+fgglkrsyymdp PSME_00034941-RA 194 ELFDMYVLEGESMREWIFFDKPRRAFESGNRKQRSLLDYSGRGWHESRKQVIKDFGGLKRSYYMDP 259 *****************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
KDFERVSRCK NIGDGLHQNS YPQTSVQLPA NIEHQENNNY VQTSEKLPPN LVEGLEVNSG 60 LEGGQINFHQ DYIPAAQPIF TFTGEEETSP IFNGPQPGLC PPPATFLGPK CALWDCSRPA 120 QGTKWCQDYY SDFHMTLASN EGAPGMRPVL CPGGIDLKDG PLFAALSAKT QEKAVGIPEC 180 EGAATAKSPW NAYELFDMYV LEGESMREWI FFDKPRRAFE SGNRKQRSLL DYSGRGWHES 240 RKQVIKDFGG LKRSYYMDP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260370.1 | 2e-98 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 2e-87 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0L9TMC5 | 1e-96 | A0A0L9TMC5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1U8A0G4 | 4e-97 | A0A1U8A0G4_NELNU; transcription factor VOZ1 | ||||
STRING | XP_010260370.1 | 6e-98 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 9e-90 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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